The Chesapeake Bay looks like a dirty bathtub, its waters turned brown with mud and awash in pollution and floating debris, including uprooted trees, propane tanks, even a battered dining-room chair.

Braving boat-damaging hazards, scientists are swarming over the bay to see if the massive stormwater runoff from Tropical Storm Lee last week is going to knock the troubled estuary for another loop, just as it was recovering from an especially rough summer.

“It just doesn’t look right,” Jamie Strong, a biologist with the Maryland Department of Natural Resources, said of the malted-milk hue of the water as he and state biologist Zofia Noe cruised north from the Bay Bridge on Wednesday to sample water conditions. Along the way, they dodged partially submerged tree trunks — not always successfully — and skirted sprawling mats of grass and trash atop the water…Read more