The study, conducted by scientists at the University of Rochester Medical Center, is based on an analysis of more than 100,000 genetic snippets of a virus known as SIV, or simian immunodeficiency virus, which infects monkeys and is a close cousin of HIV.
Lead investigator Ha Youn Lee, the assistant professor in the Department of Biostatistics and Computational Biology, said: “Viral escape is a significant phenomenon in HIV – it’s what allows HIV to elude the immune system. The dynamics in the earliest stage of infection by HIV are incredibly complex, and understanding what happens is crucial for developing a vaccine.
” Lee’s team analysed the genetic features of three key sections of the SIV genome as they changed during the first few months of infection in eight macaque monkeys, part of an effort to quantify how quickly the process of viral escape occurs. But the most striking finding is that the original viral genetic sequences are still present in the body months after the initial infection, at a time that scientists call the ‘viral set point,’ which occurs about two to five months after infection.
It’s a signal of just how difficult it is for the body to eradicate HIV from the body – key portions of the virus have managed to survive despite the immense immune assault.

